2D1K image
Deposition Date 2005-08-26
Release Date 2006-09-12
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2D1K
Title:
Ternary complex of the WH2 domain of mim with actin-dnase I
Biological Source:
Source Organism:
(Taxon ID: )Oryctolagus cuniculus (Taxon ID: 9986)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:A
Chain Length:375
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Deoxyribonuclease-1
Gene (Uniprot):DNASE1
Chain IDs:B
Chain Length:260
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Metastasis suppressor protein 1
Gene (Uniprot):MTSS1
Chain IDs:C
Chain Length:32
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
HIC A HIS 4-METHYL-HISTIDINE
Primary Citation
Structural basis for the actin-binding function of missing-in-metastasis
Structure 15 145 155 (2007)
PMID: 17292833 DOI: 10.1016/j.str.2006.12.005

Abstact

The adaptor protein missing-in-metastasis (MIM) contains independent F- and G-actin binding domains, consisting, respectively, of an N-terminal 250 aa IRSp53/MIM homology domain (IMD) and a C-terminal WASP-homology domain 2 (WH2). We determined the crystal structures of MIM's IMD and that of its WH2 bound to actin. The IMD forms a dimer, with each subunit folded as an antiparallel three-helix bundle. This fold is related to that of the BAR domain. Like the BAR domain, the IMD has been implicated in membrane binding. Yet, comparison of the structures reveals that the membrane binding surfaces of the two domains have opposite curvatures, which may determine the type of curvature of the interacting membrane. The WH2 of MIM is longer than the prototypical WH2, interacting with all four subdomains of actin. We characterize a similar WH2 at the C terminus of IRSp53 and propose that in these two proteins WH2 performs a scaffolding function.

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Primary Citation of related structures