2CHN image
Entry Detail
PDB ID:
2CHN
Keywords:
Title:
Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity- NAG-thiazoline complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2006-03-15
Release Date:
2006-05-08
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GLUCOSAMINIDASE
Chain IDs:A, B
Chain Length:716
Number of Molecules:2
Biological Source:BACTEROIDES THETAIOTAOMICRON
Polymer Type:polypeptide(L)
Description:GLUCOSAMINIDASE
Chain IDs:C, D
Chain Length:12
Number of Molecules:2
Biological Source:BACTEROIDES THETAIOTAOMICRON
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure and Mechanism of a Bacterial B-Glucosaminidase Having O-Glcnacase Activity
Nat.Struct.Mol.Biol. 13 365 ? (2006)
PMID: 16565725 DOI: 10.1038/NSMB1079

Abstact

O-GlcNAc is an abundant post-translational modification of serine and threonine residues of nucleocytoplasmic proteins. This modification, found only within higher eukaryotes, is a dynamic modification that is often reciprocal to phosphorylation. In a manner analogous to phosphatases, a glycoside hydrolase termed O-GlcNAcase cleaves O-GlcNAc from modified proteins. Enzymes with high sequence similarity to human O-GlcNAcase are also found in human pathogens and symbionts. We report the three-dimensional structure of O-GlcNAcase from the human gut symbiont Bacteroides thetaiotaomicron both in its native form and in complex with a mimic of the reaction intermediate. Mutagenesis and kinetics studies show that the bacterial enzyme, very similarly to its human counterpart, operates via an unusual 'substrate-assisted' catalytic mechanism, which will inform the rational design of enzyme inhibitors.

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Primary Citation of related structures