2CCV image
Deposition Date 2006-01-18
Release Date 2006-05-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2CCV
Keywords:
Title:
Structure of Helix Pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine (GalNAc)
Biological Source:
Source Organism:
HELIX POMATIA (Taxon ID: 6536)
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.17
R-Value Observed:
0.14
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HELIX POMATIA AGGLUTININ
Gene (Uniprot):hpa
Chain IDs:A
Chain Length:101
Number of Molecules:1
Biological Source:HELIX POMATIA
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Biochemical and Structural Analysis of Helix Pomatia Agglutinin. A Hexameric Lectin with a Novel Fold.
J.Biol.Chem. 281 20171 ? (2006)
PMID: 16704980 DOI: 10.1074/JBC.M603452200

Abstact

Helix pomatia agglutinin (HPA) is a N-acetylgalactosamine (GalNAc) binding lectin found in the albumen gland of the roman snail. As a constituent of perivitelline fluid, HPA protects fertilized eggs from bacteria and is part of the innate immunity system of the snail. The peptide sequence deduced from gene cloning demonstrates that HPA belongs to a family of carbohydrate-binding proteins recently identified in several invertebrates. This domain is also present in discoidin from the slime mold Dictyostelium discoideum. Investigation of the lectin specificity was performed with the use of glycan arrays, demonstrating that several GalNAc-containing oligosaccharides are bound and rationalizing the use of this lectin as a cancer marker. Titration microcalorimetry performed on the interaction between HPA and GalNAc indicates an affinity in the 10(-4) M range with an enthalpy-driven binding mechanism. The crystal structure of HPA demonstrates the occurrence of a new beta-sandwich lectin fold. The hexameric quaternary state was never observed previously for a lectin. The high resolution structure complex of HPA with GalNAc characterizes a new carbohydrate binding site and rationalizes the observed preference for alphaGalNAc-containing oligosaccharides.

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