2CC3 image
Deposition Date 2006-01-11
Release Date 2006-01-30
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2CC3
Title:
Structure of Agrobacterium tumefaciens VirB8 protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN VIRB8
Gene (Uniprot):virB8
Chain IDs:A, B
Chain Length:150
Number of Molecules:2
Biological Source:AGROBACTERIUM TUMEFACIENS
Ligand Molecules
Primary Citation
Agrobacterium Tumefaciens Virb8 Structure Reveals Potential Protein-Protein Interactions Sites.
Proc.Natl.Acad.Sci.USA 103 2582 ? (2006)
PMID: 16481621 DOI: 10.1073/PNAS.0511216103

Abstact

Bacterial type IV secretion systems (T4SS) translocate DNA and/or proteins to recipient cells, thus providing a mechanism for conjugative transfer of genetic material and bacterial pathogenesis. Here we describe the first structure of a core component from the archetypal Agrobacterium tumefaciens T4SS: the 2.2-A resolution crystal structure of the VirB8 periplasmic domain (pVirB8(AT)). VirB8 forms a dimer in the crystal, and we identify residues likely important for stabilization of the dimer interface. Structural comparison of pVirB8(AT) with Brucella suis VirB8 confirms that the monomers have a similar fold. In addition, the pVirB8(AT) dimer superimposes very closely on the B. suis VirB8 dimer, supporting the proposal that dimer formation in the crystal reflects self-interactions that are biologically significant. The evolutionary conservation level for each residue was obtained from a data set of 84 VirB8 homologs and projected onto the protein structure to indicate conserved surface patches that likely contact other T4SS proteins.

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