2C9D image
Deposition Date 2005-12-09
Release Date 2006-12-13
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2C9D
Keywords:
Title:
Lumazine Synthase from Mycobacterium tuberculosis Bound to 3-(1,3,7- TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)HEXANE 1-PHOSPHATE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.32
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:160
Number of Molecules:10
Biological Source:MYCOBACTERIUM TUBERCULOSIS
Primary Citation
Structural and Thermodynamic Insights Into the Binding Mode of Five Novel Inhibitors of Lumazine Synthase from Mycobacterium Tuberculosis.
FEBS J. 273 4790 4804 (2006)
PMID: 16984393 DOI: 10.1111/J.1742-4658.2006.05481.X

Abstact

Recently published genomic investigations of the human pathogen Mycobacterium tuberculosis have revealed that genes coding the proteins involved in riboflavin biosynthesis are essential for the growth of the organism. Because the enzymes involved in cofactor biosynthesis pathways are not present in humans, they appear to be promising candidates for the development of therapeutic drugs. The substituted purinetrione compounds have demonstrated high affinity and specificity to lumazine synthase, which catalyzes the penultimate step of riboflavin biosynthesis in bacteria and plants. The structure of M. tuberculosis lumazine synthase in complex with five different inhibitor compounds is presented, together with studies of the binding reactions by isothermal titration calorimetry. The inhibitors showed the association constants in the micromolar range. The analysis of the structures demonstrated the specific features of the binding of different inhibitors. The comparison of the structures and binding modes of five different inhibitors allows us to propose the ribitylpurinetrione compounds with C4-C5 alkylphosphate chains as most promising leads for further development of therapeutic drugs against M. tuberculosis.

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Primary Citation of related structures