2C4F image
Entry Detail
PDB ID:
2C4F
Keywords:
Title:
crystal structure of factor VII.stf complexed with pd0297121
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2005-10-18
Release Date:
2006-10-18
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:COAGULATION FACTOR VII PRECURSOR
Chain IDs:A (auth: H)
Chain Length:254
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:COAGULATION FACTOR VII PRECURSOR
Chain IDs:B (auth: L)
Chain Length:142
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:TISSUE FACTOR PRECURSOR
Chain IDs:C (auth: T)
Chain Length:75
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:TISSUE FACTOR PRECURSOR
Chain IDs:D (auth: U)
Chain Length:116
Number of Molecules:1
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN D ASN GLYCOSYLATION SITE
CGU B GLU GAMMA-CARBOXY-GLUTAMIC ACID
Primary Citation
The Discovery of Fluoropyridine-Based Inhibitors of the Factor Viia/Tf Complex--Part 2
Bioorg.Med.Chem.Lett. 16 1060 ? (2006)
PMID: 16289811 DOI: 10.1016/J.BMCL.2005.10.076

Abstact

The activated factor VII/tissue factor complex (FVIIa/TF) is known to play a key role in the formation of blood clots. Inhibition of this complex may lead to new antithrombotic drugs. A fluoropyridine-based series of FVIIa/TF inhibitors was discovered which utilized a diisopropylamino group for binding in the S2 and S3 binding pockets of the active site of the enzyme complex. In this series, an enhancement in binding affinity was observed by substitution at the 5-position of the hydroxybenzoic acid sidechain. An X-ray crystal structure indicates that amides at this position may increase inhibitor binding affinity through interactions with the S1'/S2' pocket.

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