2C1D image
Deposition Date 2005-09-13
Release Date 2005-10-06
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2C1D
Keywords:
Title:
Crystal structure of SoxXA from P. pantotrophus
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.21
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SOXA
Gene (Uniprot):soxA
Chain IDs:A, C, E, G
Chain Length:264
Number of Molecules:4
Biological Source:PARACOCCUS DENITRIFICANS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SOXX
Gene (Uniprot):soxX
Chain IDs:B, D, F, H
Chain Length:137
Number of Molecules:4
Biological Source:PARACOCCUS PANTOTROPHUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSS A CYS S-MERCAPTOCYSTEINE
Primary Citation
Structure of the Cytochrome Complex Soxxa of Paracoccus Pantotrophus, a Heme Enzyme Initiating Chemotrophic Sulfur Oxidation.
J.Struct.Biol. 152 229 ? (2005)
PMID: 16297640 DOI: 10.1016/J.JSB.2005.09.002

Abstact

The sulfur-oxidizing enzyme system (Sox) of the chemotroph Paracoccus pantotrophus is composed of several proteins, which together oxidize hydrogen sulfide, sulfur, thiosulfate or sulfite and transfers the gained electrons to the respiratory chain. The hetero-dimeric cytochrome c complex SoxXA functions as heme enzyme and links covalently the sulfur substrate to the thiol of the cysteine-138 residue of the SoxY protein of the SoxYZ complex. Here, we report the crystal structure of the c-type cytochrome complex SoxXA. The structure could be solved by molecular replacement and refined to a resolution of 1.9A identifying the axial heme-iron coordination involving an unusual Cys-251 thiolate of heme2. Distance measurements between the three heme groups provide deeper insight into the electron transport inside SoxXA and merge in a better understanding of the initial step of the aerobic sulfur oxidation process in chemotrophic bacteria.

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Primary Citation of related structures
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