ISDA

Deposition Date 2005-07-28

Release Date 2006-04-07

Last Version Date 2024-11-06

Entry Detail

PDB ID:

2BY4

Keywords:

HYDROLASE

Title:

SR Ca(2+)-ATPase in the HnE2 state complexed with the thapsigargin derivative Boc-12ADT.

Biological Source:

Source Organism:

ORYCTOLAGUS CUNICULUS (Taxon ID: 9986)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.30 Å

R-Value Free:

0.31

R-Value Work:

0.25

R-Value Observed:

0.25

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:A
Chain Length:994
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS

UniProt ID:P04191 Pfam ID:PF00690, PF00122, PF13246, PF00702, PF00689 EC:7.2.2.10

Ligand Molecules

ACP

AD4

Primary Citation

Natural Products as Starting Materials for Development of Second-Generation Serca Inhibitors Targeted Towards Prostate Cancer Cells

Soehoel, H, Jensen, A.L, Moller, J.V, Nissen, P, Denmeade, S.R, Isaacs, J.T, Olsen, C.E, Christensen, S.B.Show

Bioorg.Med.Chem. 14 2810 ? (2006)

PMID: 16412648 DOI: 10.1016/J.BMC.2005.12.001

Abstact

An analysis of the binding of the 8-O-N-tert-butoxycarbonyl-12-aminododecanoyl derivative of 8-O-debutanoylthapsigargin to the target molecule, the SERCA pump, has revealed the importance of the length and flexibility of the side chain attached to O-8. Based on the analysis a series of analogues to the 2-unsubstituted analogue trilobolide has been constructed and shown to be equipotent with thapsigargin as SERCA inhibitors. Only the 12-Boc-aminododecaonoyl derivative, however, was found to be apoptotic.

Legend

Protein

Chemical

Disease

Primary Citation of related structures