ISDA

Deposition Date 2005-06-09

Release Date 2006-01-23

Last Version Date 2024-11-13

Entry Detail

PDB ID:

2BUB

Keywords:

HYDROLASE/INHIBITOR

Title:

Crystal Structure Of Human Dipeptidyl Peptidase IV (CD26) in Complex with a Reversed Amide Inhibitor

Biological Source:

Source Organism:

HOMO SAPIENS (Taxon ID: 9606)

Host Organism:

PICHIA METHANOLICA

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.66 Å

R-Value Free:

0.32

R-Value Work:

0.25

R-Value Observed:

0.26

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DIPEPTIDYL PEPTIDASE 4
Gene (Uniprot):DPP4
Chain IDs:A, B
Chain Length:728
Number of Molecules:2
Biological Source:HOMO SAPIENS

UniProt ID:P27487 Pfam ID:PF00930, PF00326 EC:3.4.14.5

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	A	ASN	GLYCOSYLATION SITE

Ligand Molecules

FPB

NAG

Primary Citation

The reversed binding of beta-phenethylamine inhibitors of DPP-IV: X-ray structures and properties of novel fragment and elaborated inhibitors.

Nordhoff, S, Cerezo-Galvez, S, Feurer, A, Hill, O, Matassa, V.G, Metz, G, Rummey, C, Thiemann, M, Edwards, P.J.Show

Bioorg. Med. Chem. Lett. 16 1744 1748 (2006)

PMID: 16376544 DOI: 10.1016/j.bmcl.2005.11.103

Abstact

The co-crystal structure of beta-phenethylamine fragment inhibitor 5 bound to DPP-IV revealed that the phenyl ring occupied the proline pocket of the enzyme. This finding provided the basis for a general hypothesis of a reverse binding mode for beta-phenethylamine-based DPP-IV inhibitors. Novel inhibitor design concepts that obviate substrate-like structure-activity relationships (SAR) were thereby enabled, and novel, potent inhibitors were discovered.

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Protein

Chemical

Disease

Primary Citation of related structures