2BSE image
Deposition Date 2005-05-20
Release Date 2005-11-02
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2BSE
Keywords:
Title:
Structure of Lactococcal Bacteriophage p2 Receptor Binding Protein in complex with a llama VHH domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RECEPTOR BINDING PROTEIN
Gene (Uniprot):rbp
Chain IDs:A, B, C
Chain Length:264
Number of Molecules:3
Biological Source:LACTOCOCCUS VIRUS P2
Polymer Type:polypeptide(L)
Molecule:LLAMA IMMUNOGLOBULIN
Chain IDs:D, E, F
Chain Length:123
Number of Molecules:3
Biological Source:LAMA GLAMA
Primary Citation
Lactococcal Bacteriophage P2 Receptor Binding Protein Structure Suggests a Common Ancestor Gene with Bacterial and Mammalian Viruses.
Nat.Struct.Mol.Biol. 13 85 ? (2006)
PMID: 16327804 DOI: 10.1038/NSMB1029

Abstact

Lactococcus lactis is a Gram-positive bacterium used extensively by the dairy industry for the manufacture of fermented milk products. The double-stranded DNA bacteriophage p2 infects specific L. lactis strains using a receptor-binding protein (RBP) located at the tip of its noncontractile tail. We have solved the crystal structure of phage p2 RBP, a homotrimeric protein composed of three domains: the shoulders, a beta-sandwich attached to the phage; the neck, an interlaced beta-prism; and the receptor-recognition head, a seven-stranded beta-barrel. We used the complex of RBP with a neutralizing llama VHH domain to identify the receptor-binding site. Structural similarity between the recognition-head domain of phage p2 and those of adenoviruses and reoviruses, which invade mammalian cells, suggests that these viruses, despite evolutionary distant targets, lack of sequence similarity and the different chemical nature of their genomes (DNA versus RNA), might have a common ancestral gene.

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