2BQ1 image
Deposition Date 2005-04-26
Release Date 2006-05-17
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2BQ1
Keywords:
Title:
Ribonucleotide reductase class 1b holocomplex R1E,R2F from Salmonella typhimurium
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.99 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 ALPHA SUBUNIT
Gene (Uniprot):nrdE
Chain IDs:A (auth: E), B (auth: F)
Chain Length:714
Number of Molecules:2
Biological Source:SALMONELLA TYPHIMURIUM
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA SUBUNIT
Gene (Uniprot):nrdF
Chain IDs:C (auth: I), D (auth: J)
Chain Length:319
Number of Molecules:2
Biological Source:SALMONELLA TYPHIMURIUM
Primary Citation
The First Holocomplex Structure of Ribonucleotide Reductase Gives New Insight Into its Mechanism of Action
J.Mol.Biol. 359 365 ? (2006)
PMID: 16631785 DOI: 10.1016/J.JMB.2006.03.035

Abstact

Ribonucleotide reductase is an indispensable enzyme for all cells, since it catalyses the biosynthesis of the precursors necessary for both building and repairing DNA. The ribonucleotide reductase class I enzymes, present in all mammals as well as in many prokaryotes and DNA viruses, are composed mostly of two homodimeric proteins, R1 and R2. The reaction involves long-range radical transfer between the two proteins. Here, we present the first crystal structure of a ribonucleotide reductase R1/R2 holocomplex. The biological relevance of this complex is based on the binding of the R2 C terminus in the hydrophobic cleft of R1, an interaction proven to be crucial for enzyme activity, and by the fact that all conserved amino acid residues in R2 are facing the R1 active sites. We suggest that the asymmetric R1/R2 complex observed in the 4A crystal structure of Salmonella typhimurium ribonucleotide reductase represents an intermediate stage in the reaction cycle, and at the moment of reaction the homodimers transiently form a tight symmetric complex.

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Primary Citation of related structures
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