2BM3 image
Deposition Date 2005-03-09
Release Date 2005-03-10
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2BM3
Keywords:
Title:
Structure of the Type II cohesin from Clostridium thermocellum SdbA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.26
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 63 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SCAFFOLDING DOCKERIN BINDING PROTEIN A
Gene (Uniprot):sdbA
Chain IDs:A
Chain Length:166
Number of Molecules:1
Biological Source:CLOSTRIDIUM THERMOCELLUM
Ligand Molecules
Primary Citation
Insights Into the Structural Determinants of Cohesin-Dockerin Specificity Revealed by the Crystal Structure of the Type II Cohesin from Clostridium Thermocellum Sdba.
J.Mol.Biol. 349 909 ? (2005)
PMID: 15913653 DOI: 10.1016/J.JMB.2005.04.037

Abstact

The plant cell wall degrading enzymes expressed by anaerobic microorganisms form large multienzyme complexes (cellulosomes). Cellulosomes assemble by the Type I dockerins on the catalytic subunits binding to the reiterated Type I cohesins in the molecular scaffold, while Type II dockerin-cohesin interactions anchor the complex onto the bacterial cell surface. Type I and Type II cohesin, dockerin pairs show no cross-specificity. Here we report the crystal structure of the Type II cohesin (CohII) from the Clostridium thermocellum cell surface anchoring protein SdbA. The protein domain contains nine beta-strands and a small alpha-helix. The beta-strands assemble into two elongated beta-sheets that display a typical jelly roll fold. The structure of CohII is very similar to Type I cohesins, and the dockerin binding site, which is centred at beta-strands 3, 5 and 6, is likely to be conserved in the two proteins. Subtle differences in the topology of the binding sites and a lack of sequence identity in the beta-strands that comprise the core of the dockerin binding site explain why Type I and Type II cohesins display such distinct specificities for their target dockerins.

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Primary Citation of related structures