2BIT image
Deposition Date 2005-01-26
Release Date 2005-01-26
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2BIT
Keywords:
Title:
Crystal structure of human cyclophilin D at 1.7 A resolution
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.71 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Gene (Uniprot):PPIF
Mutagens:YES
Chain IDs:A (auth: X)
Chain Length:165
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Crystal Engineering Yields Crystals of Cyclophilin D Diffracting to 1.7 A Resolution
Acta Crystallogr.,Sect.D 61 513 519 (2005)
PMID: 15858260 DOI: 10.1107/S0907444905003070

Abstact

In the pharmaceutical industry, knowledge of the three-dimensional structure of a specific target facilitates the drug-discovery process. Despite possessing favoured analytical properties such as high purity and monodispersion in light scattering, some proteins are not capable of forming crystals suitable for X-ray analysis. Cyclophilin D, an isoform of cyclophilin that is expressed in the mitochondria, was selected as a drug target for the treatment of cardiac disorders. As the wild-type enzyme defied all attempts at crystallization, protein engineering on the enzyme surface was performed. The K133I mutant gave crystals that diffracted to 1.7 A resolution using in-house X-ray facilities and were suitable for soaking experiments. The crystals were very robust and diffraction was maintained after soaking in 25% DMSO solution: excellent conditions for the rapid analysis of complex structures including crystallographic fragment screening.

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Primary Citation of related structures
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