2BF1 image
Deposition Date 2004-12-02
Release Date 2005-02-17
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2BF1
Keywords:
Title:
Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Free:
0.38
R-Value Work:
0.38
R-Value Observed:
0.38
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:EXTERIOR MEMBRANE GLYCOPROTEIN GP120
Gene (Uniprot):env
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:SIMIAN IMMUNODEFICIENCY VIRUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core
Nature 433 834 ? (2005)
PMID: 15729334 DOI: 10.1038/NATURE03327

Abstact

Envelope glycoproteins of human and simian immunodeficiency virus (HIV and SIV) undergo a series of conformational changes when they interact with receptor (CD4) and co-receptor on the surface of a potential host cell, leading ultimately to fusion of viral and cellular membranes. Structures of fragments of gp120 and gp41 from the envelope protein are known, in conformations corresponding to their post-attachment and postfusion states, respectively. We report the crystal structure, at 4 A resolution, of a fully glycosylated SIV gp120 core, in a conformation representing its prefusion state, before interaction with CD4. Parts of the protein have a markedly different organization than they do in the CD4-bound state. Comparison of the unliganded and CD4-bound structures leads to a model for events that accompany receptor engagement of an envelope glycoprotein trimer. The two conformations of gp120 also present distinct antigenic surfaces. We identify the binding site for a compound that inhibits viral entry.

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Primary Citation of related structures