2BED image
Deposition Date 2005-10-24
Release Date 2006-08-08
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2BED
Keywords:
Title:
Structure of FPT bound to inhibitor SCH207736
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit
Gene (Uniprot):Fnta
Chain IDs:A
Chain Length:313
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Protein farnesyltransferase beta subunit
Gene (Uniprot):Fntb
Chain IDs:B
Chain Length:401
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Enhanced FTase activity achieved via piperazine interaction with catalytic zinc.
Bioorg.Med.Chem.Lett. 16 984 988 (2006)
PMID: 16298128 DOI: 10.1016/j.bmcl.2005.10.090

Abstact

Benzocycloheptapyridine tricyclic compounds with piperazine or substituted piperidine moieties extending either from the 5- or 6-position of the tricyclic bridgehead exhibited enhanced FTase activity: this resulted from favorable binding of the ligand nitrogen with the catalytic zinc found in the FTase. A single isomer at C-11 with piperazine adduct extending from the 6-position, compound 24, exhibited excellent FTase activity with IC50 = 0.007 microM, soft agar IC50 = 72 nM, and Rat AUC(PO, 10 mpk) = 4.0 microM x h. X-ray of (-)-[8-chloro-6-(1-piperazinyl)-1H-benzo[5,6]]cyclohepta[1,2-b]pyridine-11-yl]-1-(methylsulfonyl)piperidine 24 bound to Ftase revealed favorable interaction between piperazine nitrogen and catalytic zinc atom.

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Primary Citation of related structures