2BE4 image
Deposition Date 2005-10-21
Release Date 2005-11-01
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2BE4
Title:
X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843
Biological Source:
Source Organism:
Danio rerio (Taxon ID: 7955)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:hypothetical protein LOC449832
Gene (Uniprot):scgn
Chain IDs:A
Chain Length:272
Number of Molecules:1
Biological Source:Danio rerio
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.
Proteins 76 477 483 (2009)
PMID: 19241471 DOI: 10.1002/prot.22362

Abstact

Many essential physiological processes are regulated by the modulation of calcium concentration in the cell. The EF-hand proteins represent a superfamily of calcium-binding proteins involved in calcium signaling and homeostasis. Secretagogin is a hexa-EF-hand protein that is highly expressed in pancreatic islet of Langerhans and neuroendocrine cells and may play a role in the trafficking of secretory granules. We present the X-ray structure of Danio rerio secretagogin, which is 73% identical to human secretagogin, in calcium-free form at 2.1-A resolution. Secretagogin consists of the three globular domains each of which contains a pair of EF-hand motifs. The domains are arranged into a V-shaped molecule with a distinct groove formed at the interface of the domains. Comparison of the secretagogin structure with the solution structure of calcium-loaded calbindin D(28K) revealed a striking difference in the spatial arrangement of their domains, which involves approximately 180 degrees rotation of the first globular domain with respect to the module formed by the remaining domains.

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Primary Citation of related structures