2BDZ image
Deposition Date 2005-10-21
Release Date 2006-10-03
Last Version Date 2025-11-12
Entry Detail
PDB ID:
2BDZ
Keywords:
Title:
Mexicain from Jacaratia mexicana
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mexicain
Chain IDs:A, B, C, D
Chain Length:214
Number of Molecules:4
Biological Source:Jacaratia mexicana
Ligand Molecules
Primary Citation
Structure of the mexicain-E-64 complex and comparison with other cysteine proteases of the papain family.
Acta Crystallogr.,Sect.D 63 555 563 (2007)
PMID: 17452780 DOI: 10.1107/S0907444907005616

Abstact

Mexicain is a 23.8 kDa cysteine protease from the tropical plant Jacaratia mexicana. It is isolated as the most abundant product after cation-exchange chromatography of the mix of proteases extracted from the latex of the fruit. The purified enzyme inhibited with E-64 [N-(3-carboxyoxirane-2-carbonyl)-leucyl-amino(4-guanido)butane] was crystallized by sitting-drop vapour diffusion and the structure was solved by molecular replacement at 2.1 A resolution and refined to an R factor of 17.7% (R(free) = 23.8%). The enzyme belongs to the alpha+beta class of proteins and the structure shows the typical papain-like fold composed of two domains, the alpha-helix-rich (L) domain and the beta-barrel-like (R) domain, separated by a groove containing the active site formed by residues Cys25 and His159, one from each domain. The four monomers in the asymmetric unit show one E-64 molecule covalently bound to Cys25 in the active site and differences have been found in the placement of E-64 in each monomer.

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Primary Citation of related structures
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