2B5W image
Entry Detail
PDB ID:
2B5W
Keywords:
Title:
Crystal structure of D38C glucose dehydrogenase mutant from Haloferax mediterranei
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2005-09-29
Release Date:
2006-04-04
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.15
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:glucose dehydrogenase
Mutations:C38D
Chain IDs:A
Chain Length:357
Number of Molecules:1
Biological Source:Haloferax mediterranei
Primary Citation
Analysis of protein solvent interactions in glucose dehydrogenase from the extreme halophile Haloferax mediterranei.
Proc.Natl.Acad.Sci.Usa 103 4846 4851 (2006)
PMID: 16551747 DOI: 10.1073/pnas.0508854103

Abstact

The structure of glucose dehydrogenase from the extreme halophile Haloferax mediterranei has been solved at 1.6-A resolution under crystallization conditions which closely mimic the "in vivo" intracellular environment. The decoration of the enzyme's surface with acidic residues is only partially neutralized by bound potassium counterions, which also appear to play a role in substrate binding. The surface shows the expected reduction in hydrophobic character, surprisingly not from changes associated with the loss of exposed hydrophobic residues but rather arising from a loss of lysines consistent with the genome wide-reduction of this residue in extreme halophiles. The structure reveals a highly ordered, multilayered solvation shell that can be seen to be organized into one dominant network covering much of the exposed surface accessible area to an extent not seen in almost any other protein structure solved. This finding is consistent with the requirement of the enzyme to form a protective shell in a dehydrating environment.

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