2B5B image
Deposition Date 2005-09-28
Release Date 2006-06-27
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2B5B
Keywords:
Title:
A reptilian defensin with anti-bacterial and anti-viral activity
Biological Source:
Source Organism:
Caretta caretta (Taxon ID: 8467)
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
10
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Defensin
Chain IDs:A
Chain Length:36
Number of Molecules:1
Biological Source:Caretta caretta
Ligand Molecules
Primary Citation
Small cationic protein from a marine turtle has beta-defensin-like fold and antibacterial and antiviral activity.
Proteins 64 524 531 (2006)
PMID: 16700051 DOI: 10.1002/prot.20963

Abstact

Egg white of marine turtle Caretta caretta contains a small cationic protein but lacks lysozyme. The protein was sequenced by a combination of sequential Edman degradation, carboxypeptidase digestion, nuclear magnetic resonance (NMR) and electrospray ionization tandem mass spectrometry. The protein contains 36 amino acid residues of which six are half-cysteines. The three-dimensional structure of the protein was deduced from two-dimensional NMR experiments and was observed to be similar to vertebrate beta-defensins. However, disulfide connectivity is C1-C6/C2-C5/C3-C4; different from that of the vertebrate beta-defensins. The protein showed strong antibacterial activity against Escherichia coli and Salmonella typhimurium. The protein also showed significant antiviral activity against an enveloped rhabdovirus, Chandipura virus, which is an emerging human pathogen. This virus is also closely related to the vesicular stomatitis virus, whose growth was also inhibited. This small cationic protein is part of the innate immunity of this organism and replaces lysozyme in the egg. It has the potential to be developed as an antibacterial and antiviral agent.

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Primary Citation of related structures