2B48 image
Deposition Date 2005-09-22
Release Date 2006-02-14
Last Version Date 2023-08-23
Entry Detail
PDB ID:
2B48
Title:
Bcl-XL 3D Domain Swapped Dimer
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.45 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Apoptosis regulator Bcl-X
Gene (Uniprot):BCL2L1
Chain IDs:A
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
BCL-X(L) Dimerization by Three-dimensional Domain Swapping.
J.Mol.Biol. 356 367 381 (2006)
PMID: 16368107 DOI: 10.1016/j.jmb.2005.11.032

Abstact

Dimeric interactions among anti- and pro-apoptotic members of the BCL-2 protein family are dynamically regulated and intimately involved in survival and death functions. We report the structure of a BCL-X(L) homodimers a 3D-domain swapped dimer (3DDS). The X-ray crystal structure demonstrates the mutual exchange of carboxy-terminal regions including BH2 (Bcl-2 homology 2) between monomer subunits, with the hinge region occurring at the hairpin turn between the fifth and sixth alpha helices. Both BH3 peptide-binding hydrophobic grooves are unoccupied in the 3DDS dimer and available for BH3 peptide binding, as confirmed by sedimentation velocity analysis. BCL-X(L) 3DDS dimers have increased pore-forming activity compared to monomers, suggesting that 3DDS dimers may act as intermediates in membrane pore formation. Chemical crosslinking studies of Cys-substituted BCL-X(L) proteins demonstrate that 3DDS dimers form in synthetic lipid vesicles.

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Primary Citation of related structures