2AVK image
Deposition Date 2005-08-30
Release Date 2006-08-08
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2AVK
Title:
met-azido-DcrH-Hr
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.53 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:hemerythrin-like domain protein DcrH
Gene (Uniprot):dcrH
Chain IDs:A
Chain Length:136
Number of Molecules:1
Biological Source:Desulfovibrio vulgaris
Primary Citation
Structural Basis for O(2) Sensing by the Hemerythrin-like Domain of a Bacterial Chemotaxis Protein: Substrate Tunnel and Fluxional N Terminus.
Biochemistry 45 9023 9031 (2006)
PMID: 16866347 DOI: 10.1021/bi0607812

Abstact

The methyl-accepting chemotaxis protein, DcrH, from the anaerobic sulfate-reducing bacterium, Desulfovibrio vulgaris (Hildenborough), has a hemerythrin-like domain, DcrH-Hr, at its C terminus. DcrH-Hr was previously shown to contain a diiron site that binds O2, suggesting an O2-sensing function. X-ray crystal structures of diferric (met-), azido-diferric (azidomet-), and diferrous (deoxy-) DcrH-Hr reveal a "substrate tunnel" distinct from that in invertebrate hemerythrins. This tunnel is proposed to facilitate the rapid autoxidation of oxy-DcrH-Hr and suggests that sensing is triggered by O2 binding and subsequent oxidation of the diferrous active site. The N-terminal loop of DcrH-Hr is highly ordered in both met- and azidomet-DcrH-Hr but is disordered in deoxy-DcrH-Hr. These redox-dependent conformational differences presumably transduce the sensory signal of DcrH-Hr to the neighboring methylation domain in the full-length receptor. Given the putative cytoplasmic localization of its Hr-like O2-sensing domain, DcrH is proposed to serve a role in negative aerotaxis (anaerotaxis).

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Primary Citation of related structures