2ARJ image
Deposition Date 2005-08-19
Release Date 2006-05-30
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2ARJ
Keywords:
Title:
CD8alpha-alpha in complex with YTS 105.18 Fab
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Rattus norvegicus (Taxon ID: 10116)
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:YTS 105.18 antigen binding region Heavy chain
Chain IDs:B (auth: H), D (auth: B)
Chain Length:215
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:YTS 105.18 antigen binding region Light chain
Chain IDs:A (auth: L), C (auth: A)
Chain Length:211
Number of Molecules:2
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD8 alpha chain
Gene (Uniprot):Cd8a
Chain IDs:E (auth: R), F (auth: Q)
Chain Length:123
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Crystal structure of the TCR co-receptor CD8alphaalpha in complex with monoclonal antibody YTS 105.18 Fab fragment at 2.88 A resolution.
J.Mol.Biol. 358 347 354 (2006)
PMID: 16530222 DOI: 10.1016/j.jmb.2006.02.016

Abstact

The CD8 glycoprotein functions as an essential element in the control of T-cell selection, maturation and the TCR-mediated response to peptide antigen. CD8 is expressed as both heterodimeric CD8alphabeta and homodimeric CD8alphaalpha isoforms, which have distinct physiological roles and exhibit tissue-specific expression patterns. CD8alphaalpha has previously been crystallized in complex with class I pMHC and, more recently, with the mouse class Ib thymic leukemia antigen (TL). Here, we present the crystal structure of a soluble form of mouse CD8alphaalpha in complex with rat monoclonal antibody YTS 105.18 Fab fragment at 2.88 A resolution. YTS 105.18, which is commonly used in the blockade of CD8+ T-cell activation in response to peptide antigen, is specific for mouse CD8alpha. The YTS 105.18 Fab is one of only five rat IgG Fab structures to have been reported to date. Analysis of the YTS 105.18 Fab epitope on CD8alpha reveals that this antibody blocks CD8 activity by hydrogen bonding to residues that are critical for interaction with both class I pMHC and TL. Structural comparison of the liganded and unliganded forms of soluble CD8alphaalpha indicates that the mouse CD8alphaalpha immunoglobulin-domain dimer does not undergo significant structural alteration upon interaction either with class I pMHC or TL.

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Primary Citation of related structures