2ANK image
Deposition Date 2005-08-11
Release Date 2006-11-14
Last Version Date 2023-08-23
Entry Detail
PDB ID:
2ANK
Title:
orally active thrombin inhibitors in complex with thrombin and an exosite decapeptide
Biological Source:
Source Organism:
Synthetic (Taxon ID: )
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin heavy chain
Gene (Uniprot):F2
Chain IDs:A (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin light chain
Gene (Uniprot):F2
Chain IDs:B (auth: L)
Chain Length:34
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:synthetic peptide
Chain IDs:C (auth: P)
Chain Length:11
Number of Molecules:1
Biological Source:Synthetic
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ALC C ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
HYP C PRO 4-HYDROXYPROLINE
SMF C PHE 4-SULFOMETHYL-L-PHENYLALANINE
Ligand Molecules
Peptide-like Molecules
PRD_000480
Primary Citation
Orally active thrombin inhibitors. Part 2: optimization of the P2-moiety
BIOORG.MED.CHEM.LETT. 16 2648 2653 (2006)
PMID: 16460939 DOI: 10.1016/j.bmcl.2006.01.046

Abstact

Synthesis and SAR of orally active thrombin inhibitors of the d-Phe-Pro-Arg type with focus on the P2-moiety are described. The unexpected increase in in vitro potency, oral bioavailability, and in vivo activity of inhibitors with dehydroproline as P2-isostere is discussed. Over a period of 24h the antithrombin activity of the most active inhibitors with IC(50)s in the nanomolar range was determined in dogs demonstrating high thrombin inhibitory activity in plasma and an appropriate duration of action after oral administration.

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Primary Citation of related structures