2AK4 image
Entry Detail
PDB ID:
2AK4
Keywords:
Title:
Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2005-08-03
Release Date:
2005-10-11
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA-B35 variant
Chain IDs:A, F, K, P (auth: Q)
Chain Length:276
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, G, L, Q (auth: R)
Chain Length:99
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:EBV peptide LPEPLPQGQLTAY
Chain IDs:C, H, M, R (auth: S)
Chain Length:13
Number of Molecules:4
Biological Source:
Polymer Type:polypeptide(L)
Description:SB27 T cell receptor alpha chain
Chain IDs:D, I, N, S (auth: T)
Chain Length:211
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:SB27 T cell receptor beta chain
Chain IDs:E, J, O (auth: P), T (auth: U)
Chain Length:245
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide
Nat.Immunol. 6 1114 1122 (2005)
PMID: 16186824 DOI: 10.1038/ni1257

Abstact

Unusually long major histocompatibility complex (MHC) class I-restricted epitopes are important in immunity, but their 'bulged' conformation represents a potential obstacle to alphabeta T cell receptor (TCR)-MHC class I docking. To elucidate how such recognition is achieved while still preserving MHC restriction, we have determined here the structure of a TCR in complex with HLA-B(*)3508 presenting a peptide 13 amino acids in length. This complex was atypical of TCR-peptide-MHC class I interactions, being dominated at the interface by peptide-mediated interactions. The TCR assumed two distinct orientations, swiveling on top of the centrally bulged, rigid peptide such that only limited contacts were made with MHC class I. Although the TCR-peptide recognition resembled an antibody-antigen interaction, the TCR-MHC class I contacts defined a minimal 'generic footprint' of MHC-restriction. Thus our findings simultaneously demonstrate the considerable adaptability of the TCR and the 'shape' of MHC restriction.

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Primary Citation of related structures