2AJU image
Deposition Date 2005-08-02
Release Date 2006-02-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2AJU
Keywords:
Title:
Cyrstal structure of cocaine catalytic antibody 7A1 Fab'
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ANTIBODY 7A1 FAB'
Chain IDs:B (auth: H)
Chain Length:219
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:ANTIBODY 7A1 FAB'
Chain IDs:A (auth: L)
Chain Length:216
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure 14 205 216 (2006)
PMID: 16472740 DOI: 10.1016/j.str.2005.10.014

Abstact

Antibody 7A1 hydrolyzes cocaine to produce nonpsychoactive metabolites ecgonine methyl ester and benzoic acid. Crystal structures of 7A1 Fab' and six complexes with substrate cocaine, the transition state analog, products ecgonine methyl ester and benzoic acid together and individually, as well as heptaethylene glycol have been analyzed at 1.5-2.3 angstroms resolution. Here, we present snapshots of the complete cycle of the cocaine hydrolytic reaction at atomic resolution. Significant structural rearrangements occur along the reaction pathway, but they are generally limited to the binding site, including the ligands themselves. Several interacting side chains either change their rotamers or alter their mobility to accommodate the different reaction steps. CDR loop movements (up to 2.3 angstroms) and substantial side chain rearrangements (up to 9 angstroms) alter the shape and size (approximately 320-500 angstroms3) of the antibody active site from "open" to "closed" to "open" for the substrate, transition state, and product states, respectively.

Legend

Protein

Chemical

Disease

Primary Citation of related structures