ISDA

Deposition Date 2005-07-22

Release Date 2006-08-01

Last Version Date 2023-11-15

Entry Detail

PDB ID:

2AEI

Keywords:

HYDROLASE

Title:

Crystal structure of a ternary complex of factor VIIa/tissue factor and 2-[[6-[3-(aminoiminomethyl)phenoxy]-3,5-difluro-4-[(1-methyl-3-phenylpropyl)amino]-2-pyridinyl]oxy]-benzoic acid

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Cricetulus griseus

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.52 Å

R-Value Free:

0.29

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Coagulation factor VII
Gene (Uniprot):F7
Chain IDs:B (auth: H)
Chain Length:254
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P08709 Pfam ID:PF00089, PF00594, PF00008, PF14670 EC:3.4.21.21

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Coagulation factor VII
Gene (Uniprot):F7
Chain IDs:A (auth: L)
Chain Length:152
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P08709 Pfam ID:PF00089, PF00594, PF00008, PF14670 EC:3.4.21.21

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tissue factor
Gene (Uniprot):F3
Chain IDs:C (auth: T)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P13726 Pfam ID:PF01108, PF09294

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
CGU	A	GLU	GAMMA-CARBOXY-GLUTAMIC ACID

Ligand Molecules

03R

CAC

Primary Citation

The discovery of fluoropyridine-based inhibitors of the Factor VIIa/TF complex.

Kohrt, J.T, Filipski, K.J, Cody, W.L, Cai, C, Dudley, D.A, Van Huis, C.A, Willardsen, J.A, Rapundalo, S.T, Saiya-Cork, K, Leadley, R.J, Narasimhan, L, Zhang, E, Whitlow, M, Adler, M, McLean, K, Chou, Y.L, McKnight, C, Arnaiz, D.O, Shaw, K.J, Light, D.R, Edmunds, J.J.Show

Bioorg.Med.Chem.Lett. 15 4752 4756 (2005)

PMID: 16125385 DOI: 10.1016/j.bmcl.2005.07.059

Abstact

The activated Factor VII/tissue factor complex (FVIIa/TF) plays a key role in the formation of blood clots. Inhibition of this complex may lead to new antithrombotic drugs. An X-ray crystal structure of a fluoropyridine-based FVIIa/TF inhibitor bound in the active site of the enzyme complex suggested that incorporation of substitution at the 5-position of the hydroxybenzoic acid side chain could lead to the formation of more potent inhibitors through interactions with the S1'/S2' pocket.

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Protein

Chemical

Disease

Primary Citation of related structures