2A3M image
Deposition Date 2005-06-25
Release Date 2006-04-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2A3M
Title:
Structure of Desulfovibrio desulfuricans G20 tetraheme cytochrome (oxidized form)
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit
Gene (Uniprot):Dde_3182
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Desulfovibrio desulfuricans subsp. desulfuricans str.
Ligand Molecules
Primary Citation
Desulfovibrio desulfuricans G20 Tetraheme Cytochrome Structure at 1.5A and Cytochrome Interaction with Metal Complexes
J.Mol.Biol. 358 1314 1327 (2006)
PMID: 16580681 DOI: 10.1016/j.jmb.2006.03.010

Abstact

The structure of the type I tetraheme cytochrome c(3) from Desulfovibrio desulfuricans G20 was determined to 1.5 Angstrom by X-ray crystallography. In addition to the oxidized form, the structure of the molybdate-bound form of the protein was determined from oxidized crystals soaked in sodium molybdate. Only small structural shifts were obtained with metal binding, consistent with the remarkable structural stability of this protein. In vitro experiments with pure cytochrome showed that molybdate could oxidize the reduced cytochrome, although not as rapidly as U(VI) present as uranyl acetate. Alterations in the overall conformation and thermostability of the metal-oxidized protein were investigated by circular dichroism studies. Again, only small changes in protein structure were documented. The location of the molybdate ion near heme IV in the crystal structure suggested heme IV as the site of electron exit from the reduced cytochrome and implicated Lys14 and Lys56 in binding. Analysis of structurally conserved water molecules in type I cytochrome c(3) crystal structures identified interactions predicted to be important for protein stability and possibly for intramolecular electron transfer among heme molecules.

Legend

Protein

Chemical

Disease

Primary Citation of related structures