1vrs image
Deposition Date 2005-06-17
Release Date 2005-07-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1VRS
Keywords:
Title:
Crystal structure of the disulfide-linked complex between the N-terminal and C-terminal domain of the electron transfer catalyst DsbD
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.28
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thiol:disulfide interchange protein dsbD
Gene (Uniprot):dsbD
Mutations:C103S
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:143
Number of Molecules:3
Biological Source:Escherichia coli str. K12 substr.
Polymer Type:polypeptide(L)
Molecule:Thiol:disulfide interchange protein dsbD
Gene (Uniprot):dsbD
Mutations:C464S
Chain IDs:B (auth: D), D (auth: E), F
Chain Length:134
Number of Molecules:3
Biological Source:Escherichia coli str. K12 substr.
Primary Citation
Structural basis and kinetics of inter- and intramolecular disulfide exchange in the redox catalyst DsbD
Embo J. 23 1709 1719 (2004)
PMID: 15057279 DOI: 10.1038/sj.emboj.7600178

Abstact

DsbD from Escherichia coli catalyzes the transport of electrons from cytoplasmic thioredoxin to the periplasmic disulfide isomerase DsbC. DsbD contains two periplasmically oriented domains at the N- and C-terminus (nDsbD and cDsbD) that are connected by a central transmembrane (TM) domain. Each domain contains a pair of cysteines that are essential for catalysis. Here, we show that Cys109 and Cys461 form a transient interdomain disulfide bond between nDsbD and cDsbD in the reaction cycle of DsbD. We solved the crystal structure of this catalytic intermediate at 2.85 A resolution, which revealed large relative domain movements in DsbD as a consequence of a strong overlap between the surface areas of nDsbD that interact with DsbC and cDsbD. In addition, we have measured the kinetics of all functional and nonfunctional disulfide exchange reactions between redox-active, periplasmic proteins and protein domains from the oxidative DsbA/B and the reductive DsbC/D pathway. We show that both pathways are separated by large kinetic barriers for nonfunctional disulfide exchange between components from different pathways.

Legend

Protein

Chemical

Disease

Primary Citation of related structures