1p5r image
Deposition Date 2003-04-28
Release Date 2003-07-29
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1P5R
Keywords:
Title:
Formyl-CoA Transferase in complex with Coenzyme A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Formyl-coenzyme A transferase
Gene (Uniprot):frc
Chain IDs:A, B
Chain Length:428
Number of Molecules:2
Biological Source:Oxalobacter formigenes
Ligand Molecules
Primary Citation
Formyl-CoA Transferase encloses the CoA binding site at the interface of an interlocked dimer
Embo J. 22 3210 3219 (2003)
PMID: 12839984 DOI: 10.1093/emboj/cdg333

Abstact

Formyl-CoA transferase catalyses transfer of CoA from formate to oxalate in the first step of oxalate degradation by Oxalobacter formigenes, a bacterium present in the intestinal flora which is implicated in oxalate catabolism in mammals. Formyl-CoA transferase is a member of a family of CoA-transferases for which no structural information is available. We now report the three-dimensional structure of O.formigenes formyl-CoA transferase, which reveals a novel fold and a very striking assembly of the homodimer. The subunit is composed of a large and a small domain where residues from both the N- and C-termini of the subunit are part of the large domain. The linkers between the domains give the subunit a circular shape with a hole in the middle. The enzyme monomers are tightly interacting and are interlocked. This fold requires drastic rearrangement of approximately 75 residues at the C-terminus for formation of the dimer. The structure of a complex of formyl-CoA transferase with CoA is also reported and sets the scene for a mechanistic understanding of enzymes of this family of CoA-transferases.

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Primary Citation of related structures