1nm5 image
Deposition Date 2003-01-09
Release Date 2004-01-13
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1NM5
Keywords:
Title:
R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD(P) transhydrogenase subunit alpha part 1
Mutations:Q132N
Chain IDs:A, B
Chain Length:384
Number of Molecules:2
Biological Source:Rhodospirillum rubrum
Polymer Type:polypeptide(L)
Molecule:NAD(P) transhydrogenase subunit beta
Chain IDs:C
Chain Length:203
Number of Molecules:1
Biological Source:Rhodospirillum rubrum
Primary Citation
Glutamine 132 in the NAD(H)-binding component of proton-translocating transhydrogenase tethers the nucleotides before hydride transfer.
Biochemistry 42 1217 1226 (2003)
PMID: 12564924 DOI: 10.1021/bi027032e

Abstact

Transhydrogenase, found in bacterial membranes and inner mitochondrial membranes of animal cells, couples the redox reaction between NAD(H) and NADP(H) to proton translocation. In this work, the invariant Gln132 in the NAD(H)-binding component (dI) of the Rhodospirillum rubrum transhydrogenase was substituted with Asn (to give dI.Q132N). Mixtures of the mutant protein and the NADP(H)-binding component (dIII) of the enzyme readily produced an asymmetric complex, (dI.Q132N)(2)dIII(1). The X-ray structure of the complex revealed specific changes in the interaction between bound nicotinamide nucleotides and the protein at the hydride transfer site. The first-order rate constant of the redox reaction between nucleotides bound to (dI.Q132N)(2)dIII(1) was <1% of that for the wild-type complex, and the deuterium isotope effect was significantly decreased. The nucleotide binding properties of the dI component in the complex were asymmetrically affected by the Gln-to-Asn mutation. In intact, membrane-bound transhydrogenase, the substitution completely abolished all catalytic activity. The results suggest that Gln132 in the wild-type enzyme behaves as a "tether" or a "tie" in the mutual positioning of the (dihydro)nicotinamide rings of NAD(H) and NADP(H) for hydride transfer during the conformational changes that are coupled to the translocation of protons across the membrane. This ensures that hydride transfer is properly gated and does not take place in the absence of proton translocation.

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Primary Citation of related structures