1n6m image
Deposition Date 2002-11-11
Release Date 2003-10-28
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1N6M
Keywords:
Title:
Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.30
R-Value Work:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Claret segregational protein
Gene (Uniprot):ncd
Mutagens:N600K
Chain IDs:A, B
Chain Length:409
Number of Molecules:2
Biological Source:Drosophila melanogaster
Primary Citation
Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd
EMBO J. 22 1 8 (2003)
PMID: 14532111 DOI: 10.1093/emboj/cdg531

Abstact

Molecular motors undergo conformational changes to produce force and move along cytoskeletal filaments. Structural changes have been detected in kinesin motors; however, further changes are expected because previous crystal structures are in the same or closely related conformations. We report here a 2.5 A crystal structure of the minus-end kinesin, Ncd, with the coiled-coil stalk/neck and one head rotated by approximately 75 degrees relative to the other head. The two heads are asymmetrically positioned with respect to the stalk and show asymmetry of nucleotide state: one head is fully occupied, but the other is unstably bound to ADP. Unlike previous structures, our new atomic model can be fit into cryoelectron microscopy density maps of the motor attached to microtubules, where it appears to resemble a one-head-bound motor with the stalk rotated towards the minus end. Interactions between neck and motor core residues, observed in the head that moves with the stalk, are disrupted in the other head, permitting rotation of the stalk/neck. The rotation could represent a force-producing stroke that directs the motor to the minus end.

Legend

Protein

Chemical

Disease

Primary Citation of related structures