1ko3 image
Deposition Date 2001-12-20
Release Date 2003-09-02
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1KO3
Keywords:
Title:
VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with Cys221 reduced
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VIM-2 metallo-beta-lactamase
Gene (Uniprot):blaVIM-2
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Primary Citation
The three-dimensional structure of VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa in its reduced and oxidised form
J.Mol.Biol. 375 604 611 (2008)
PMID: 18061205 DOI: 10.1016/j.jmb.2007.11.012

Abstact

The crystal structures of the universally widespread metallo-beta-lactamase (MBL) Verona integron-encoded MBL (VIM)-2 from Pseudomonas aeruginosa have been solved in their native form as well as in an unexpected oxidised form. This carbapenem-hydrolysing enzyme belongs to the so-called B1 subfamily of MBLs and shares the folding of alpha beta/beta alpha sandwich, consisting of a core of beta-sheet surrounded by alpha-helices. Surprisingly, it showed a high tendency to be strongly oxidised at the catalytic cysteine located in the Cys site, Cys221, which, in the oxidised structure, becomes a cysteinesulfonic residue. Its native structure was obtained only in the presence of Tris(2-carboxyethyl)phosphine. This oxidation might be a consequence of a lower affinity for the second Zn located in the Cys site that would also explain the observed susceptibility of VIM-2 to chelating agents. This modification, if present in nature, might play a role in catalytic down-regulation. Comparison between native and oxidised VIM-2 and a predicted model of VIM-1 (which shows one residue different in the Cys site compared with VIM-2) is performed to explain the different activities and antibiotic specificities.

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