1fpv image
Deposition Date 1993-03-04
Release Date 1994-01-31
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1FPV
Keywords:
Title:
STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA VIRUS EMPTY PARTICLES
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2
Chain IDs:A
Chain Length:584
Number of Molecules:1
Biological Source:Feline panleukopenia virus
Ligand Molecules
Primary Citation

Abstact

Various crystal forms of the single-stranded DNA, feline panleukopenia virus (FPV), a parvovirus, have been grown of both full virions and empty particles. The structure of empty particles crystallized in an orthorhombic space group P2(1)2(1)2(1), with unit cell dimensions a = 380.1 A, b = 379.3 A, and c = 350.9 A, has been determined to 3.3 A resolution. The data were collected using oscillation photography with synchrotron radiation. The orientations of the empty capsids in the unit cell were determined using a self-rotation function and their positions were obtained with an R-factor search using canine parvovirus (CPV) as a model. Phases were then calculated, based on the CPV model, to 6.0 A resolution and gradually extended to 3.3 A resolution by molecular replacement electron density averaging. The resultant electron density was readily interpreted in terms of the known amino acid sequence. The structure is contrasted to that of CPV in terms of host range, neutralization by antibodies, hemagglutination properties, and binding of genomic DNA.

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Primary Citation of related structures