1d4t image
Deposition Date 1999-10-06
Release Date 1999-10-14
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1D4T
Title:
CRYSTAL STRUCTURE OF THE XLP PROTEIN SAP IN COMPLEX WITH A SLAM PEPTIDE
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.16
R-Value Work:
0.11
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T CELL SIGNAL TRANSDUCTION MOLECULE SAP
Gene (Uniprot):SH2D1A
Chain IDs:A
Chain Length:104
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
Gene (Uniprot):SLAMF1
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:
Primary Citation
Crystal structures of the XLP protein SAP reveal a class of SH2 domains with extended, phosphotyrosine-independent sequence recognition.
Mol.Cell 4 555 561 (1999)
PMID: 10549287 DOI: 10.1016/S1097-2765(00)80206-3

Abstact

SAP, the product of the gene mutated in X-linked lymphoproliferative syndrome (XLP), consists of a single SH2 domain that has been shown to bind the cytoplasmic tail of the lymphocyte coreceptor SLAM. Here we describe structures that show that SAP binds phosphorylated and nonphosphorylated SLAM peptides in a similar mode, with the tyrosine or phosphotyrosine residue inserted into the phosphotyrosine-binding pocket. We find that specific interactions with residues N-terminal to the tyrosine, in addition to more characteristic C-terminal interactions, stabilize the complexes. A phosphopeptide library screen and analysis of mutations identified in XLP patients confirm that these extended interactions are required for SAP function. Further, we show that SAP and the similar protein EAT-2 recognize the sequence motif TIpYXX(V/I).

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Primary Citation of related structures