1ZSP image
Deposition Date 2005-05-24
Release Date 2006-05-02
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1ZSP
Keywords:
Title:
Contribution to Structure and Catalysis of Tyrosine 34 in Human Manganese Superoxide Dismutase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Mn], mitochondrial
Gene (Uniprot):SOD2
Mutations:Y34A
Chain IDs:A, B
Chain Length:198
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Contribution of human manganese superoxide dismutase tyrosine 34 to structure and catalysis.
Biochemistry 48 3417 3424 (2009)
PMID: 19265433 DOI: 10.1021/bi8023288

Abstact

Superoxide dismutase (SOD) enzymes are critical in controlling levels of reactive oxygen species (ROS) that are linked to aging, cancer, and neurodegenerative disease. Superoxide (O(2)(*-)) produced during respiration is removed by the product of the SOD2 gene, the homotetrameric manganese superoxide dismutase (MnSOD). Here, we examine the structural and catalytic roles of the highly conserved active-site residue Tyr34, based upon structure-function studies of MnSOD enzymes with mutations at this site. Substitution of Tyr34 with five different amino acids retained the active-site protein structure and assembly but caused a substantial decrease in the catalytic rate constant for the reduction of superoxide. The rate constant for formation of the product inhibition complex also decreases but to a much lesser extent, resulting in a net increase in the level of product inhibited form of the mutant enzymes. Comparisons of crystal structures and catalytic rates also suggest that one mutation, Y34V, interrupts the hydrogen-bonded network, which is associated with a rapid dissociation of the product-inhibited complex. Notably, with three of the Tyr34 mutants, we also observe an intermediate in catalysis, which has not been reported previously. Thus, these mutants establish a means of trapping a catalytic intermediate that promises to help elucidate the mechanism of catalysis.

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