1ZOM image
Deposition Date 2005-05-13
Release Date 2006-05-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1ZOM
Keywords:
Title:
Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with a peptidomimetic Inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.22
R-Value Work:
0.20
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Coagulation factor XI
Gene (Uniprot):F11
Mutations:S452A, T493A, K455A, C500S
Chain IDs:A
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, synthesis, and biological evaluation of peptidomimetic inhibitors of factor XIa as novel anticoagulants.
J.Med.Chem. 49 7781 7791 (2006)
PMID: 17181160 DOI: 10.1021/jm060978s

Abstact

Human coagulation factor XIa (FXIa), a serine protease activated by site-specific cleavage of factor XI by thrombin, FXIIa, or autoactivation, is a critical enzyme in the amplification phase of the coagulation cascade. To investigate the potential of FXIa inhibitors as safe anticoagulants, a series of potent, selective peptidomimetic inhibitors of FXIa were designed and synthesized. Some of these inhibitors showed low nanomolar FXIa inhibitory activity with >1000-fold FXa selectivity and >100-fold thrombin selectivity. The X-ray structure of one of these inhibitors, 36, demonstrates its unique binding interactions with FXIa. Compound 32 caused a doubling of the activated partial thromboplastin time in human plasma at 2.4 microM and was efficacious in a rat model of venous thrombosis. These data suggest that factor XIa plays a significant role in venous thrombosis and may be a suitable target for the development of antithrombotic therapy.

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