1ZL7 image
Deposition Date 2005-05-05
Release Date 2006-04-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1ZL7
Keywords:
Title:
Crystal structure of catalytically-active phospholipase A2 with bound calcium
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:hypotensive phospholipase A2
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Bothrops jararacussu
Primary Citation
Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie 88 543 549 (2006)
PMID: 16376474 DOI: 10.1016/j.biochi.2005.10.014

Abstact

The electrophile Ca(2+) is an essential multifunctional co-factor in the phospholipase A(2) mediated hydrolysis of phospholipids. Crystal structures of an acidic phospholipase A(2) from the venom of Bothrops jararacussu have been determined both in the Ca(2+) free and bound states at 0.97 and 1.60 A resolutions, respectively. In the Ca(2+) bound state, the Ca(2+) ion is penta-coordinated by a distorted pyramidal cage of oxygen and nitrogen atoms that is significantly different to that observed in structures of other Group I/II phospholipases A(2). In the absence of Ca(2+), a water molecule occupies the position of the Ca(2+) ion and the side chain of Asp49 and the calcium-binding loop adopts a different conformation.

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Primary Citation of related structures