1Z71 image
Deposition Date 2005-03-23
Release Date 2005-05-17
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1Z71
Title:
thrombin and P2 pyridine N-oxide inhibitor complex structure
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:thrombin
Gene (Uniprot):F2
Chain IDs:A
Chain Length:287
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Hirudin IIIB'
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:Hirudo medicinalis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS B TYR O-SULFO-L-TYROSINE
Ligand Molecules
Primary Citation

Abstact

In this study, we have demonstrated that the critical hydrogen bonding motif of the established 3-aminopyrazinone thrombin inhibitors can be effectively mimicked by a 2-aminopyridine N-oxide. As this peptidomimetic core is more resistant toward oxidative metabolism, it also overcomes the metabolic liability associated with the pyrazinones. An optimization study of the P(1) benzylamide delivered the potent thrombin inhibitor 21 (K(i) = 3.2 nM, 2xaPTT = 360 nM), which exhibited good plasma levels and half-life after oral dosing in the dog (C(max) = 2.6 microM, t(1/2) = 4.5 h).

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Chemical

Disease

Primary Citation of related structures