1Z65 image
Entry Detail
PDB ID:
1Z65
Title:
Mouse Doppel 1-30 peptide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2005-03-21
Release Date:
2006-02-07
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
22
Selection Criteria:
structures with favorable non-bond energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Prion-like protein doppel
Chain IDs:A
Chain Length:30
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
NMR Solution Structure of the Peptide Fragment 1-30, Derived from Unprocessed Mouse Doppel Protein, in DHPC Micelles
Biochemistry 45 159 166 (2006)
PMID: 16388591 DOI: 10.1021/bi051313f

Abstact

The downstream prion-like Doppel (Dpl) protein is a homologue related to the prion protein (PrP). Dpl is expressed in the brains of mice that do not express PrP, and Dpl is known to be toxic to neurons. One mode of toxicity has been suggested to involve direct membrane interactions. PrP under certain conditions of cell trafficking retains an uncleaved signal peptide, which may also hold for the much less studied Dpl. For a peptide with a sequence derived from the N-terminal part (1-30) of mouse Dpl (mDpl(1-30)) CD spectroscopy shows about 40% alpha-helical structure in DHPC and SDS micelles. In aqueous solution it is mostly a random coil. The three-dimensional solution structure was determined by NMR for mDpl(1-30) associated with DHPC micelles. 2D 1H NMR spectra of the peptide in q = 0.25 DMPC/DHPC bicelles only showed signals from the unstructured termini, indicating that the structured part of the peptide resides within the lipid bilayer. Together with 2H2O exchange data in the DHPC micelle solvent, these results show an alpha-helix protected from solvent exchange between residues 7 and 19, and suggest that the alpha-helical segment can adopt a transmembrane localization also in a membrane. Leakage studies with entrapped calcein in large unilamellar phospholipid vesicles showed that the peptide is almost as membrane perturbing as melittin, known to form pores in membranes. The results suggest a possible channel formation mechanism for the unprocessed Dpl protein, which may be related to toxicity through direct cell membrane interaction and damage.

Legend

Protein

Chemical

Disease

Primary Citation of related structures