1Z53 image
Deposition Date 2005-03-17
Release Date 2005-06-21
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1Z53
Keywords:
Title:
The 1.13 Angstrom Structure of Iron-free Cytochrome c Peroxidase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.13 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c peroxidase, mitochondrial
Gene (Uniprot):CCP1
Chain IDs:A
Chain Length:294
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
The 1.13-A structure of iron-free cytochrome c peroxidase.
J.Biol.Inorg.Chem. 10 425 430 (2005)
PMID: 15900441 DOI: 10.1007/s00775-005-0654-4

Abstact

The iron-free cytochrome c peroxidase (CCP) crystal structure has been determined to 1.13 A and compared with the 1.2-A ferric-CCP structure. Quite unexpectedly, removal of the iron has no effect on porphyrin geometry and distortion, indicating that protein-porphyrin interactions and not iron coordination or formation of the axial His-Fe bond determines porphyrin conformation. However, there are changes in solvent structure in the distal pocket, which lead to changes in the distal His52 acid-base catalyst. The observed ability of His52 to move in response to small changes in solvent structure is very likely important for its role as a catalyst in assisting in the heterolytic fission of the peroxide O-O bond.

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Primary Citation of related structures