1YYN image
Deposition Date 2005-02-25
Release Date 2005-03-15
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1YYN
Keywords:
Title:
A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus neurotoxin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tetanus toxin
Gene (Uniprot):tetX
Chain IDs:A
Chain Length:441
Number of Molecules:1
Biological Source:Clostridium tetani
Primary Citation
Common binding site for disialyllactose and tri-peptide in C-fragment of tetanus neurotoxin
Proteins 61 288 295 (2005)
PMID: 16104015 DOI: 10.1002/prot.20595

Abstact

Clostridial neurotoxins are comprised of botulinum (BoNT) and tetanus (TeNT), which share significant structural and functional similarity. Crystal structures of the binding domain of TeNT complexed with disialyllactose (DiSia) and a tri-peptide Tyr-Glu-Trp (YEW) have been determined to 2.3 and 2.2 A, respectively. Both DiSia and YEW bind in a shallow cleft region on the surface of the molecule in the beta-trefoil domain, interacting with a set of common residues, Asp1147, Asp1214, Asn1216, and Arg1226. DiSia and YEW binding at the same site in tetanus toxin provides a putative site that could be occupied either by a ganglioside moiety or a peptide. Soaking experiments with a mixture of YEW and DiSia show that YEW competes with DiSia, suggesting that YEW can be used to block ganglioside binding. A comparison with the TeNT binding domain in complex with small molecules, BoNT/A and /B, provides insight into the different modes of ganglioside binding.

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Primary Citation of related structures