1YTT image
Deposition Date 1995-11-09
Release Date 1996-06-10
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1YTT
Title:
YB SUBSTITUTED SUBTILISIN FRAGMENT OF MANNOSE BINDING PROTEIN-A (SUB-MBP-A), MAD STRUCTURE AT 110K
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MANNOSE-BINDING PROTEIN A
Gene (Uniprot):Mbl1
Chain IDs:A, B
Chain Length:115
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Direct observation of protein solvation and discrete disorder with experimental crystallographic phases.
Science 271 72 77 (1996)
PMID: 8539602

Abstact

A complete and accurate set of experimental crystallographic phases to a resolution of 1.8 angstroms was obtained for a 230-residue dimeric fragment of rat mannose-binding protein A with the use of multiwavelength anomalous dispersion (MAD) phasing. An accurate image of the crystal structure could thus be obtained without resort to phases calculated from a model. Partially reduced disulfide bonds, local disorder, and differences in the mobility of chemically equivalent molecules are apparent in the experimental electron density map. A solvation layer is visible that includes well-ordered sites of hydration around polar and charged protein atoms, as well as diffuse, partially disordered solvent shells around exposed hydrophobic groups. Because the experimental phases and the resulting electron density map are free from the influence of a model, they provide a stringent test of theoretical models of macromolecular solvation, motion, and conformational heterogeneity.

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Primary Citation of related structures