1YQV image
Entry Detail
PDB ID:
1YQV
Keywords:
Title:
The crystal structure of the antibody Fab HyHEL5 complex with lysozyme at 1.7A resolution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2005-02-02
Release Date:
2005-04-26
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HyHEL-5 Antibody Heavy Chain
Chain IDs:B (auth: H)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:HyHEL-5 Antibody Light Chain
Chain IDs:A (auth: L)
Chain Length:211
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Hen Egg White Lysozyme
Chain IDs:C (auth: Y)
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
Water molecules in the antibody-antigen interface of the structure of the Fab HyHEL-5-lysozyme complex at 1.7 A resolution: comparison with results from isothermal titration calorimetry.
Acta Crystallogr.,Sect.D 61 628 633 (2005)
PMID: 15858274 DOI: 10.1107/S0907444905007870

Abstact

The structure of the complex between hen egg-white lysozyme and the Fab HyHEL-5 at 2.7 A resolution has previously been reported [Cohen et al. (1996), Acta Cryst. D52, 315-326]. With the availability of recombinant Fab, the X-ray structure of the complex has been re-evaluated at 1.7 A resolution. The refined structure has yielded a detailed picture of the Fab-lysozyme interface, showing the high complementarity of the protein surfaces as well as several water molecules within the interface that complete the good fit. The model of the full complex has improved significantly, yielding an R(work) of 19.5%. With this model, the structural results can be compared with the results of isothermal titration calorimetry. An attempt has been made to estimate the changes in bound waters that accompany complex formation and the difficulties inherent in using the crystal structures to provide the information necessary to make this calculation are discussed.

Legend

Protein

Chemical

Disease

Primary Citation of related structures