1YQ2 image
Deposition Date 2005-02-01
Release Date 2005-10-04
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1YQ2
Keywords:
Title:
beta-galactosidase from Arthrobacter sp. C2-2 (isoenzyme C2-2-1)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:beta-galactosidase
Gene (Uniprot):lacZ
Mutations:V903M
Chain IDs:A, B, C, D, E, F
Chain Length:1024
Number of Molecules:6
Biological Source:Arthrobacter sp. C2-2
Primary Citation
Cold-active beta-Galactosidase from Arthrobacter sp. C2-2 Forms Compact 660kDa Hexamers: Crystal Structure at 1.9A Resolution
J.Mol.Biol. 353 282 294 (2005)
PMID: 16171818 DOI: 10.1016/j.jmb.2005.08.028

Abstact

The X-ray structure of cold-active beta-galactosidase (isoenzyme C-2-2-1) from an Antarctic bacterium Arthrobacter sp. C2-2 was solved at 1.9A resolution. The enzyme forms 660 kDa hexamers with active sites opened to the central cavity of the hexamer and connected by eight channels with exterior solvent. To our best knowledge, this is the first cold-active beta-galactosidase with known structure and also the first known beta-galactosidase structure in the form of compact hexamers. The hexamer organization regulates access of substrates and ligands to six active sites and this unique packing, present also in solution, raises questions about its purpose and function. This enzyme belongs to glycosyl hydrolase family 2, similarly to Escherichia coli beta-galactosidase, forming tetramers necessary for its enzymatic function. However, we discovered significant differences between these two enzymes affecting the ability of tetramer/hexamer formation and complementation of the active site. This structure reveals new insights into the cold-adaptation mechanisms of enzymatic pathways of extremophiles.

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