1YPG image
Deposition Date 2005-01-31
Release Date 2006-01-17
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1YPG
Keywords:
BLOOD CLOTTING/HYDROLASE INHIBITOR
Title:
Thrombin Inhibitor Complex
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
1YPG validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin heavy chain
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hirudin
Chain IDs:C (auth: I)
Chain Length:10
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P01050
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin light chain
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR O-SULFO-L-TYROSINE
Ligand Molecules
UIR
Primary Citation
A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates
Angew.Chem.Int.Ed.Engl. 45 985 989 (2006)
PMID: 16374786 DOI: 10.1002/anie.200502302
Primary Citation of related structures
1Y3V
1YP9
1YPE
1YPJ