1YO8 image
Deposition Date 2005-01-26
Release Date 2005-09-27
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1YO8
Keywords:
Title:
Structure of the C-terminal domain of human thrombospondin-2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:thrombospondin-2
Gene (Uniprot):THBS2
Chain IDs:A
Chain Length:634
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
MSE A MET SELENOMETHIONINE
SER A SER GLYCOSYLATION SITE
Primary Citation
Structure of the calcium-rich signature domain of human thrombospondin-2
Nat.Struct.Mol.Biol. 12 910 914 (2005)
PMID: 16186819 DOI: 10.1038/nsmb997

Abstact

Thrombospondins (THBSs) are secreted glycoproteins that have key roles in interactions between cells and the extracellular matrix. Here, we describe the 2.6-A-resolution crystal structure of the glycosylated signature domain of human THBS2, which includes three epidermal growth factor-like modules, 13 aspartate-rich repeats and a lectin-like module. These elements interact extensively to form three structural regions termed the stalk, wire and globe. The THBS2 signature domain is stabilized by these interactions and by a network of 30 bound Ca(2+) ions and 18 disulfide bonds. The structure suggests how genetic alterations of THBSs result in disease.

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Disease

Primary Citation of related structures