1YNU image
Entry Detail
PDB ID:
1YNU
Keywords:
Title:
Crystal structure of apple ACC synthase in complex with L-vinylglycine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2005-01-25
Release Date:
2005-05-03
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.28
R-Value Work:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:1-aminocyclopropane-1-carboxylate synthase
Chain IDs:A
Chain Length:473
Number of Molecules:1
Biological Source:Malus x domestica
Primary Citation
Structure of ACC synthase inactivated by the mechanism-based inhibitor L-vinylglycine.
Febs Lett. 579 2458 2462 (2005)
PMID: 15848188 DOI: 10.1016/j.febslet.2005.03.048

Abstact

L-Vinylglycine (L-VG) is both a substrate for and a mechanism-based inhibitor of 1-aminocyclopropane-1-carboxylate (ACC) synthase. The ratio of the rate constants for catalytic conversion to alpha-ketobutyrate and ammonia to inactivation is 500/1. The crystal structure of the covalent adduct of the inactivated enzyme was determined at 2.25 Angstroms resolution. The active site contains an external aldimine of the adduct of L-VG with the pyridoxal 5'-phosphate cofactor. The side chain gamma-carbon of L-VG is covalently bound to the epsilon-amino group of Lys273. This species corresponds to one of the two alternatives proposed by Feng and Kirsch [Feng, L. and Kirsch, J.F. (2000) L-Vinylglycine is an alternative substrate as well as a mechanism-based inhibitor of 1-aminocyclopropane-1-carboxylate synthase. Biochemistry 39, 2436-2444] and presumably results from Michael addition to a vinylglycine ketimine intermediate.

Legend

Protein

Chemical

Disease

Primary Citation of related structures