1YK4 image
Deposition Date 2005-01-17
Release Date 2006-01-17
Last Version Date 2024-05-29
Entry Detail
PDB ID:
1YK4
Title:
Ultra-high resolution structure of Pyrococcus abyssi rubredoxin W4L/R5S
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.69 Å
R-Value Free:
0.10
R-Value Work:
0.1
R-Value Observed:
0.1
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Rubredoxin
Gene (Uniprot):rub
Mutations:W4L, R5S
Chain IDs:A
Chain Length:52
Number of Molecules:1
Biological Source:Pyrococcus abyssi
Ligand Molecules
Primary Citation
Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin. I. 0.69 A X-ray structure of mutant W4L/R5S.
Acta Crystallogr.,Sect.D 61 990 1004 (2005)
PMID: 15983423 DOI: 10.1107/S090744490501293X

Abstact

The crystal structure of Pyrococcus abyssi rubredoxin mutant W4L/R5S was solved by direct methods. The model of the air-oxidized protein was refined by partially restrained full-matrix least-squares refinement against intensity data to 0.69 A resolution. This first ultrahigh-resolution structure of a rubredoxin provides very detailed and precise information about the Fe(SCys)(4) centre and its environment, the peptide-backbone stereochemistry, H atoms and hydrogen bonds, static and dynamic disorder, the solvent structure and the electron-density distribution. P. abyssi rubredoxin W4L/R5S is the first of a series of mutants studied by atomic and ultrahigh-resolution X-ray crystallography which are expected to contribute to the understanding of structure-function relationships in iron-sulfur proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures