1YJO image
Deposition Date 2005-01-15
Release Date 2005-06-14
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1YJO
Keywords:
Title:
Structure of NNQQNY from yeast prion Sup35 with zinc acetate
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.15
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Eukaryotic peptide chain release factor GTP-binding subunit
Gene (Uniprot):SUP35
Chain IDs:A
Chain Length:6
Number of Molecules:1
Biological Source:
Primary Citation
Structure of the cross-beta spine of amyloid-like fibrils.
Nature 435 773 778 (2005)
PMID: 15944695 DOI: 10.1038/nature03680

Abstact

Numerous soluble proteins convert to insoluble amyloid-like fibrils that have common properties. Amyloid fibrils are associated with fatal diseases such as Alzheimer's, and amyloid-like fibrils can be formed in vitro. For the yeast protein Sup35, conversion to amyloid-like fibrils is associated with a transmissible infection akin to that caused by mammalian prions. A seven-residue peptide segment from Sup35 forms amyloid-like fibrils and closely related microcrystals, from which we have determined the atomic structure of the cross-beta spine. It is a double beta-sheet, with each sheet formed from parallel segments stacked in register. Side chains protruding from the two sheets form a dry, tightly self-complementing steric zipper, bonding the sheets. Within each sheet, every segment is bound to its two neighbouring segments through stacks of both backbone and side-chain hydrogen bonds. The structure illuminates the stability of amyloid fibrils, their self-seeding characteristic and their tendency to form polymorphic structures.

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