1YH3 image
Deposition Date 2005-01-06
Release Date 2005-09-27
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1YH3
Keywords:
Title:
Crystal structure of human CD38 extracellular domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADP-ribosyl cyclase 1
Gene (Uniprot):CD38
Mutagens:N100D, N164A, N219D, N209D
Chain IDs:A, B
Chain Length:256
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Crystal structure of human CD38 extracellular domain.
Structure 13 1331 1339 (2005)
PMID: 16154090 DOI: 10.1016/j.str.2005.05.012

Abstact

Human CD38 is a multifunctional protein involved in diverse functions. As an enzyme, it is responsible for the synthesis of two Ca2+ messengers, cADPR and NAADP; as an antigen, it is involved in regulating cell adhesion, differentiation, and proliferation. Besides, CD38 is a marker of progression of HIV-1 infection and a negative prognostic marker of B-CLL. We have determined the crystal structure of the soluble extracellular domain of human CD38 to 1.9 A resolution. The enzyme's overall topology is similar to the related proteins CD157 and the Aplysia ADP-ribosyl cyclase, except with large structural changes at the two termini. The extended positively charged N terminus has lateral associations with the other CD38 molecule in the crystallographic asymmetric unit. The analysis of the CD38 substrate binding models revealed two key residues that may be critical in controlling CD38's multifunctionality of NAD hydrolysis, ADP-ribosyl cyclase, and cADPR hydrolysis activities.

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